By mimicking the structure of the silk moth’s antenna, University of Michigan engineering researchers have built a better nanopore - a tiny tunnel-shaped tool that could advance understanding of a class of neurodegenerative diseases that includes Alzheimer’s.
A paper on their work is newly published online in Nature Nanotechnology.
Nanopores - essentially holes drilled in a silicon chip - are miniscule measurement devices that enable the study of single molecules or proteins. Even today’s best nanopores clog easily, so the technology hasn’t been widely adopted in the lab. Improved versions are expected to be major boons for faster, cheaper DNA sequencing.
Led by Michael Mayer, an associate professor in the departments of Biomedical Engineering and Chemical Engineering, the U-M team engineered an oily coating that traps and smoothly transports molecules of interest through nanopores. It also allows researchers to adjust the size of the pore with close-to atomic precision.
“What this gives us is an improved tool to characterize biomolecules,” Mayer said. “It allows us to gain understanding about their size, charge, shape, concentration and the speed at which they assemble. This could help us possibly diagnose and understand what is going wrong in a category of neurodegenerative disease that includes Parkinson’s, Huntington’s and Alzheimer’s.”
Mayer’s “fluid lipid bilayer” resembles a coating on the male silk moth’s antenna that helps it smell nearby female moths. The coating catches pheromone molecules in the air and carries them through nanotunnels in the exoskeleton to nerve cells that send a message to the bug’s brain.
“These pheromones are lipophilic. They like to bind to lipids, or fat-like materials. So they get trapped and concentrated on the surface of this lipid layer in the silk moth. The layer greases the movement of the pheromones to the place where they need to be. Our new coating serves the same purpose,” Mayer said.
One of Mayer’s main research tracks is to study proteins called amyloid-beta peptides that are thought to coagulate into fibers that clog the brain in Alzheimer’s. H is interested in studying the size and shape of these fibers and how they form.
“Existing techniques don’t allow you to monitor the process very well. We wanted to see the clumping of these peptides using nanopores, but every time we tried it, the pores clogged up,” Mayer said. “Then we made this coating, and now our idea works.”
To use nanopores in experiments, researchers position the pore-pricked chip between two chambers of saltwater. They drop the molecules of interest into one of the chambers and send an electric current through the pore. As each molecule or protein passes through the pore, it changes the pore’s electrical resistance. The amount of change observed tells the researchers valuable information about the molecule’s size, electrical charge and shape.
Nanopores could also be used to detect biological warfare agents.
The paper is called “Controlling protein translocation through nanopores with bio-inspired fluid walls.”
This research is funded by the National Science Foundation, the National Institutes of Health, the Alzheimer’s Disease Research Center, the Alzheimer’s Association and the National Human Genome Research Institute. The university is pursuing patent protection for the intellectual property, and is seeking commercialization partners to help bring the technology to market.